Help us create and curate a neuroimaging GitHub repo

Analyzing and Reusing Data
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Hey everyone,

Following up on the earlier post on May 19th about setting up a shared GitHub repo for imaging methods & scripts – we want to make sure we focus on what’s actually useful for you all.

1. What types of analyses would you love to see included first?
*Data preprocessing (Accessing, download, conversion, management, QA, etc..).

  • Structural MRI (segmentation, volumetrics, cortical thickness, other)
    *Diffusion (DTI, free-water, tractography)
  • Functional (resting-state, connectivity, network analysis)
  • Quantitative mapping (QSM, T1/T2*, relaxometry)
  • Accessing, download, and data management
  • Structural Analyses
  • DTI
  • Functional MRI
  • QMRI( QSM, MPM, etc.)
  • DAT-SPECT
0 voters

2. Any “must-have” methods/pipelines you always wished someone had shared?
The repo will be community-driven, so your input will directly shape what we build first. Also—if you’re up for sharing your own scripts later, even better!

Looking forward to seeing what you all find most useful!

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Thank you for championing this effort, @AmgadDroby ! While I don’t have much experience in neuroimaging myself, I’d be very excited to access and use the features generated by such a repo! So unfortunately I can’t contribute much in terms of suggesting types of analyses, but I hope to hear the guidance of this community about which analyses are most informative.

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Hi @AmgadDroby, this is great – would you mind if I shared with the folks at the PPMI Imaging WG and an MJFF imaging mailing list?

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@jgottesman : Yes definitely, that is a great idea!

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